rs49999884 SNP Detail

Summary

• ID
  rs49999884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64655468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCT CCTCTGGGGA GAATTCTGTG
  Y
  GTCACCTCAG GTGTTCATCC AACAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148571129	ENSMUSSNP1568396	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49999884					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64655468 () rs orientation: forward

Symbol	Name	Function Class
Gm43838	predicted gene 43838	within coordinates
Gm52815	predicted gene, 52815	within coordinates
Rr367845	regulatory region 367845	971 bp downstream
Rr378042	regulatory region 378042	1659 bp upstream
Rr612035	regulatory region 612035	685 bp distal
Rr612036	regulatory region 612036	136 bp proximal
Rr612037	regulatory region 612037	1058 bp proximal