rs49999887 SNP Detail

Summary

• ID
  rs49999887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:20413418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTAATAT CTCAAAAACT
  GGTCACAGGA TACTGTGTGG TGGCCATTTC CTTTGAGGAT AGTGTTTATT ACAGCAAAGC
  AACTTAAGAG GGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGATCTCATG
  CCCTCTATTA CTCTAATCCA CTGTAAAAGT GCACTCAGAA CTGAGCATCC TTAACAGTTA
  Y
  TCTATTTTTC TCCAGTAAGA GAAATGCCAA GATTTCAGGC TGTGGACTGT GTTCCAGTGG
  CAAGCAGCAG AGATCCATGT TTAGCTTGTG TGGGTATTTT TTTTTATTAA AAATGTTTGT
  AAATTTGTTT TGTGTATATG GGTGGTTTGT ACAGAGACAA TGGTAGAGAA AGACTAAATA
  GGGGGAGTTT ACGCAGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss63231311	NES17473165	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T		C	T	C		T
ss325739975	CHEV_19_20510544	CHEVERUD	SCREENING_POP	f	SNP						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs49999887					SNP	C	T	T	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63231311	NES17473165	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:20413418 () rs orientation: forward

Symbol	Name	Function Class
D19Mit23	DNA segment, Chr 19, Massachusetts Institute of Technology 23	within coordinates
Gm32689	predicted gene, 32689	799 bp upstream
Gm41816	predicted gene, 41816	1700 bp upstream
Rr356916	regulatory region 356916	1018 bp distal
Rr356917	regulatory region 356917	983 bp proximal
Rr361508	regulatory region 361508	996 bp proximal
Rr364130	regulatory region 364130	1148 bp distal