rs50000096 SNP Detail

Summary

• ID
  rs50000096
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177810624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAGCAC TGAAAACTAA
  AAGGCAAATG GAGTCTCTGC TAACCAAGGA CTAACAGCGA AGGTTCCCTG GACAAACTCT
  ATGTACTTTT GTCTTTTAAT GGCACACAAG CCAGCATGCT GAGGCTGAGA CTCATACACT
  ACGCAGTGGT AGAGGAGTTT GACCCTGACC CTATTTTCCA ACAGGCTTAT AAAGGCAAAA
  T
  CCACAACCTA GAGGGAGGTT GACATCCCCT GCATGACATC CTGGGAACTG TAGTCTCCCA
  GGGAGACGTG AGTGCCTACA ATATCCTGGT GCATGCTGGG ACATGTAGTC AGACTGCTTA
  CACGCCCAAT AGGAATCGCG GGTTTCCGCT CTCCTTTCTG GGAACGGTAG TCTTTCTGCG
  ACCTCGAGCC ACCAGGGTGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146351753	ENSMUSSNP5333928	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50000096					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177810624 () rs orientation: forward

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	365 bp upstream
Cpgi1085	CpG island 1085	30 bp proximal
Gm69850	predicted gene, 69850	within coordinates
Rr25806	regulatory region 25806	1367 bp distal
Rr29061	regulatory region 29061	within coordinates
Rr396636	regulatory region 396636	within coordinates
Tssr10371	transcription start site region 10371	369 bp upstream
Tssr10372	transcription start site region 10372	408 bp upstream