rs50000161 SNP Detail

Summary

• ID
  rs50000161
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72951984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCCAGTA GGCCATGCCC
  AAGCTGTCTC CAGGGAGGAT GCACAGCCAT GAAAAAGCTT TTAGGACAGA CCTTTGGAGT
  CTCCAGGGCA CGCCTCGCCT TACCCGGATC CTGGGGCAAT TTGAGCTTTT TGTGAATGGC
  TCTCTTGGTC TCAAGGAAAA CCACCCTCTG TGGTTCTCAC ACCTTTCAGA AGGGGCGAGG
  W
  GACCCGATCC GTGCCAGGCG AGGCGAGCAG TCGTTTCTGT GGCTGGGGGC CTGCGGGCAG
  GTGACAGGAG GCGGAGGTGG AGGCCGCTCA GGACCCGCCC CCACCGCGCT CTCCTCTACG
  GGAAGTGATG TGGGGCCAGA CGGAAAATAG CGCCAAGCAC CCAAAAAAGG CCAGTCGCAC
  GGGGTCCCGA GCTCCATTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss61420623	NES16804509	PERLEGEN	MM_PANEL2	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs50000161					SNP	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61420623	NES16804509	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72951984 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22026	CpG island 22026	within coordinates
Pigbos1	Pigb opposite strand 1	1923 bp downstream
Rab27a	RAB27A, member RAS oncogene family	152 bp upstream
Rr197292	regulatory region 197292	1584 bp distal
Rr197293	regulatory region 197293	584 bp distal
Rr206716	regulatory region 206716	within coordinates
Tssr86076	transcription start site region 86076	100 bp upstream
Tssr86077	transcription start site region 86077	131 bp upstream
Tssr86078	transcription start site region 86078	165 bp upstream
Tssr86079	transcription start site region 86079	184 bp upstream