rs50000273 SNP Detail

Summary

• ID
  rs50000273
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21285034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTCTTTT ATAGAATGTA
  GATTTACCAT GGAGTGATTG CACAGACAGG GCCCTAATCC TGGACTCCAA TTTGGCCATT
  TACAAGGTGA CTTCTGTGAG ATGCTTGCCA TCATTCTTTC TTAGTTCCTG CATCTGCAGA
  ATGAATTTAA TAATAGGCTT ATAGACATGA TAAGGCAATG CATACAGTAA TGGACAATAC
  R
  ATACATAATA ACGATAACTG ATATTCCTGT TACATAGCAG GGCTCACATT AACTAATACA
  AATGGCATGG TGCTCATGGA AGTGTCTATT CCAAGGGCTT TACATACTGA ATTCATTTAC
  TCCTCCTTGG GACCCCAGAA GGCAGCGATT GCTATCATTC CTTTTATGGA TAAATAGTCA
  GAGAGAGAGG TTAGGTGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146346657	ENSMUSSNP1009791	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50000273					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21285034 () rs orientation: forward

Symbol	Name	Function Class
Gm54105	predicted gene, 54105	within coordinates
Rr552698	regulatory region 552698	471 bp proximal
Rr552699	regulatory region 552699	759 bp proximal