rs50002506 SNP Detail

Summary

• ID
  rs50002506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:116588684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATGGTTT TAATTAGAGT
  TACTTACAGG AAGACAGGTA AAGCATATGG GCAACTTACC AGTGGCTACA CCAGGGAAAA
  ACATCTTTGT CTTAGCAACC ATTAACTATA AATCCTCAGG AATGGGTGGG ACCCTGGGTG
  AATTCTTGAT GTTTCTTGAC TCCCTACAAA AGGAGAGCTA CCTGGACATT CAAAGCTACA
  Y
  GCTTTAGATG TGAAGGCTTT TCAACCATTT CTGCATGTTG GTAGCAAATG AGTTCTCTTG
  GACACTTGCT CGTCTTTAGT ATATTCCAGT TTGCTTGGTC TGGAGGTTTG GCTCTGCCAC
  TCACTTGGGC AGCCTTAACT TTTGAATCTG TGAATACAAT GACAACGGAT GTTTCCTGGG
  ATTATATATT AAAACGGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145742525	ENSMUSSNP1295382	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50002506					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:116588684 () rs orientation: forward

Symbol	Name	Function Class
Rr381374	regulatory region 381374	1304 bp upstream