rs50004364 SNP Detail

Summary

• ID
  rs50004364
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:75564302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGCGTCTT TGGTCGAAAT CAAGATTCTA GATAGACTTC
  TCCTAAGCCC TCCGAAGTCC CCTTAGCATT CCACAGTGGG GCAGTCCTAC CGGAGACCCC
  M
  CCTCTGGTGT ACCTGTTCGT TGCTTTGCAA ATATCCTTGC AGTCATTAAA TGCAATGCCA
  GCCCGATGCT GTTGGCAGTA AATTATTTCA CGGGCTCGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148372316	ENSMUSSNP4644339	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325251673	CHEV_16_75767659	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50004364					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:75564302 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8370	CpG island 8370	405 bp distal
Hspa13	heat shock protein 70 family, member 13	within coordinates
Rr325470	regulatory region 325470	within coordinates
Rr404916	regulatory region 404916	99 bp downstream
Rr404917	regulatory region 404917	498 bp upstream
Tssr141799	transcription start site region 141799	617 bp upstream
Tssr141800	transcription start site region 141800	339 bp upstream