rs50004923 SNP Detail

Summary

• ID
  rs50004923
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112455290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGAGGT GTTTTTGTTT
  TTGTTTTAAA CCTGGAATGG AATGCTTTAT CCTTTCAGAG ATGGTCTTTT GAGATGAGCA
  ACACTAGTGA AATTCTTTTT GACTGACCAC AAGATACTAT AGGCATCTTG CCTGTGGCTC
  TGTAGAATCC TTTGGCATTT TTCAGCATGA CACTGGACAC AGAACTTCAG CACCTTTTAC
  W
  CATTATTCAC TTATTATATT TCATATATTA TTATGAAGTG GGTTGTTTCC AGTATTTTTG
  TAAGACTGAC CAATTACGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG AAAGCCAGAA
  GTCAACCTCA AGTGTCATTT CTAAGGTATT ATACATTTTA TTTTTTGAGA CAAGGTTTTT
  CACTGGAATT TTGAACTCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52696786	NES15533105	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50004923					SNP	A	A	A	A	A	A	A	A	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696786	NES15533105	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112455290 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
Rr486335	regulatory region 486335	1600 bp distal
Tssr121103	transcription start site region 121103	351 bp downstream
Tssr121104	transcription start site region 121104	319 bp downstream
Tssr121105	transcription start site region 121105	298 bp downstream