rs50005729 SNP Detail

Summary

• ID
  rs50005729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48117309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCTGGA GGGACTTCCT
  GATCGGACAT CTATGGAAAT TCCCAGAGGA AGAAGCCACT CCTCAGGTTC ATAGGACTCT
  TCTTTGTGAC CTTTTGCACA GAGTGAGCCT TACAGAGCTT TGGAGTGCAG CTTTGCAACA
  ACATGTGACC TGGACGGGTC TCACAGTGGG TCCTACACTA GCGCCTCTCA GAGAAGAGAA
  Y
  AGAGACCAGG TCCAAGCAGA ATACAGAGCA CATAGGAACA TAGTCTGTTA AGCACCTCTG
  TTAATCAATA CTTCACATTT GATCTCTGTG TATAAAGGAG ACAATAAGAA GGAACATCTG
  GATTTGAACC AGGGACCTCT TGATCTGCAG TCAAATGCTC TACCCCTGAG CTATACGCCC
  ATCTGCTTCA TATATAATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60884382	NES16037324	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50005729					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60884382	NES16037324	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48117309 () rs orientation: forward

Symbol	Name	Function Class
Gm16630	predicted gene, 16630	within coordinates
Gm30435	predicted gene, 30435	within coordinates
n-TCgca4	nuclear encoded tRNA cysteine 4 (anticodon GCA)	107 bp downstream
n-TCgca10	nuclear encoded tRNA cysteine 10 (anticodon GCA)	794 bp upstream