rs50005778 SNP Detail

Summary

• ID
  rs50005778
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:61333867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTAATGTG ATTTCTACTG
  TCAGGAATAT ATTATTCAAA ATAATACTGG TTCATGAATA TCCAGAATAT ATAACAGAGG
  CCTGCTCTCT AAAATCAGAA TGAAAATAAT TAGAAATCTT AGGACTCAAG ATATCTACGA
  GTACAAGATC ACAATGAAAA TTACTGTATC CATTTCTTCC TTTATATTGC GTTTTAACCA
  S
  CTGGAGATGA TCTGGACATG ATCTATTGAT TTCTGTAAAG GGTTCCGGAT TCTAAAGAGC
  TGTTATATAG CAAAGAACTG ATGTGGAAGA ATATCAGCCA AGAAAATCTA GTAAAGGACA
  AGAGCAATAA CAAAATAACA AAATAAACAA CTGTCTCTTT TTTCCCCCAC CCGGCAACTG
  TCTCTTATAT ATATATAGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144742877	ENSMUSSNP5761110	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50005778					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:61333867 () rs orientation: forward

Symbol	Name	Function Class
Gm72252	predicted gene, 72252	298 bp downstream
Mir344d-1	microRNA 344d-1	927 bp upstream
Mir344d-2	microRNA 344d-2	1153 bp downstream