rs50005802 SNP Detail

Summary

• ID
  rs50005802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191448230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGTGTGC TCCACCATGC
  CTAGCATTCC TTTAATACTC TGAAAAAAAT GCAGGCCCCC AAGATCTCCT GTTATACTAT
  TCTTTTATGT ATCTGGGTTC TTACTGTGGT AAAATGTCAC AAATGATGCT TTTGAAACCG
  AAATCTTGAG CTCCACTGCT TGGCTAGCAA GTGCTAATTC TCTTAAGTTA GTGTATCTAG
  Y
  GTTCAGGCAG ATGTTCTACC ATCTAGTAAG CAGATATAAG TCTCGATGCT TGTTATCAGT
  GTCAGTGGGT ACCACAGCAT GTGGAGAAGC TGAGTGAGAT GAGAACAGGT GGAATCCTTG
  AAGAAATTGA TGTTTGATTC TGGAAATATG TCTTTTGACT ATCTTCCTTA AGAATATAAT
  GACACAACTT GAATGGTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60360938	NES15860012	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50005802					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60360938	NES15860012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191448230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1225	CpG island 1225	1586 bp proximal
Lpgat1	lysophosphatidylglycerol acyltransferase 1	1716 bp upstream
Rr426207	regulatory region 426207	1226 bp proximal
Rr426208	regulatory region 426208	1781 bp proximal
Rr426209	regulatory region 426209	1861 bp proximal
Tssr10776	transcription start site region 10776	1762 bp upstream
Tssr10777	transcription start site region 10777	1875 bp upstream
Tssr10778	transcription start site region 10778	1917 bp upstream
Tssr10779	transcription start site region 10779	1952 bp upstream