rs50006249 SNP Detail

Summary

• ID
  rs50006249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32726929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GAAGGCATTG GATCTCCCAG AACTGGAGTT ATAGGTGGCT
  GTGAGCTACC TTGTAGGTTT TAGAAATCAA AACCATGTCC TTTCCAAGAT TAACAAGTGC
  Y
  CTTAACCTCT GAACCATATC TCCAGCCCCA CCAATTCCTC CCCTGTCTTA TCTAACTCTT
  CCTCCTCAAA AATGTGTCAG AGGACTCCAT TGTCTGAATT A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145473242	ENSMUSSNP52871	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50006249					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32726929 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f17	cytochrome P450, family 4, subfamily f, polypeptide 17	within coordinates
Rr392523	regulatory region 392523	1209 bp downstream
Rr525769	regulatory region 525769	1483 bp distal
Tssr143717	transcription start site region 143717	1515 bp downstream
Tssr143718	transcription start site region 143718	1482 bp downstream
Tssr143719	transcription start site region 143719	1454 bp downstream