rs50006547 SNP Detail

Summary

• ID
  rs50006547
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32603749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCAATA TTCTCCCGGA
  TTCTGGATCC TAAAGACAAT AATGATCCTT TGCTGTTTTC TGACAAAGCT TTGCATACAT
  TGCCTCATGC CGATAATCTT AAAACATGGG CGCTTTTATT TTCCCTGCAT CAAACACGGG
  GACCCTGAGT TTCAGGATTA AGTGATTTAC TAGCAGATTA AGTTGGTTAA GTTTAAAAAA
  S
  AACAACAACA ACAACAATTC ATACTTCCGA ACCCATACGC CTCACTGTCT CTATTTTCAG
  TTTTCTGGGC AGAATAGACC CTCAACTCCT CCCCAACCTC CTCTCTTTCT CCCCAACTGC
  AGCTCTCTTA TGGTCCATTG TGCATTGTTC TCCTCAAACA ATAGCTAATG AGTCGGTATT
  ACATGTTAGG AAGATCCAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136249607	ENSMUSSNP1234499	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50006547					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32603749 () rs orientation: forward

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr199954	regulatory region 199954	within coordinates
Rr203547	regulatory region 203547	346 bp proximal