rs50007496 SNP Detail

Summary

• ID
  rs50007496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25608116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTGATTTA AAAAAAAAGG AGGAATGGAC CAGCTGTCTG
  CCACAGGCCC CACCCAGGCT GACACCCATT GTGAGAGTCA GGGCTGTTCC CATAGACAGA
  Y
  ACACTGACAG CTGACTGAAC TATAGAGGTC CCCACCCCCA CCCCCACCCC CATGCTCGTT
  AAACAGCCAG GGGGGAATAA CAACACCAGG TAGCAGGGGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60584252	NES16331454	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50007496					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60584252	NES16331454	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25608116 () rs orientation: forward

Symbol	Name	Function Class
Gm63710	predicted gene, 63710	within coordinates
Rr400801	regulatory region 400801	within coordinates
Rr400802	regulatory region 400802	1012 bp upstream
Rr400803	regulatory region 400803	1351 bp upstream
Rr661050	regulatory region 661050	within coordinates
Rr661051	regulatory region 661051	455 bp proximal
Tssr76672	transcription start site region 76672	140 bp upstream
Tssr80688	transcription start site region 80688	979 bp downstream