rs50007690 SNP Detail

Summary

• ID
  rs50007690
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113881681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTACA TAGGCTGACA GGCTGCTATC
  W
  CTCAGATGGA AAGTCAAACC CTCAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147245842	ENSMUSSNP7159884	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320462307	CHEV_2_113876936	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50007690					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113881681 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562817	regulatory region 562817	1106 bp proximal
Rr562818	regulatory region 562818	1677 bp proximal
Tssr602	transcription start site region 602	720 bp upstream
Tssr19436	transcription start site region 19436	1618 bp downstream
Tssr19437	transcription start site region 19437	896 bp downstream
Tssr19438	transcription start site region 19438	780 bp downstream
Tssr19439	transcription start site region 19439	747 bp downstream
Tssr25670	transcription start site region 25670	1958 bp upstream
Tssr25671	transcription start site region 25671	1895 bp upstream
Tssr25672	transcription start site region 25672	1878 bp upstream
Tssr25673	transcription start site region 25673	1847 bp upstream
Tssr25674	transcription start site region 25674	1601 bp upstream
Tssr25675	transcription start site region 25675	1569 bp upstream
Tssr25676	transcription start site region 25676	1546 bp upstream
Tssr25677	transcription start site region 25677	1521 bp upstream
Tssr25678	transcription start site region 25678	856 bp upstream
Tssr25679	transcription start site region 25679	846 bp upstream
Tssr25680	transcription start site region 25680	835 bp upstream
Tssr25681	transcription start site region 25681	751 bp upstream
Tssr25682	transcription start site region 25682	712 bp upstream
Tssr25683	transcription start site region 25683	703 bp upstream
Tssr25684	transcription start site region 25684	585 bp upstream
Tssr25685	transcription start site region 25685	234 bp upstream
Tssr25686	transcription start site region 25686	98 bp downstream
Tssr25687	transcription start site region 25687	729 bp downstream
Tssr25688	transcription start site region 25688	793 bp downstream
Tssr25689	transcription start site region 25689	859 bp downstream
Tssr25690	transcription start site region 25690	877 bp downstream
Tssr25691	transcription start site region 25691	999 bp downstream
Tssr25692	transcription start site region 25692	1604 bp downstream