rs50008345 SNP Detail

Summary

• ID
  rs50008345
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27920794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTTAGAA CCAGGAGCTG
  CCTAAGACGG CCTCTCACAC GGAGGATGCA GGGAATCAAT CCACTAGAGC AGGTCCTCTT
  GAATTCAACT TGGAACAGTA CTAGGGCTTC AGGTCCTTCT GTGGGGCCAC CCCTGCCTCT
  GCTGTGGCAT GTGTCCTCTC TCAAGTCAGT CGTGTGTCCT TCCAGGAGCA CTGGATACCC
  G
  GACTGCCGGT TGGTATGCAT TTTTCCTTTG CAGAGTCTGA CTGTGGGTTT TTCTCAAGCT
  GTCTTCAAGG AAGTGGAGCG TCCTTGGTAG CTTGGGAACC CTTAGGGTGT CCCACCATCA
  TGGTGGAAAG GAACAAGGTC CTGGGCCTGC CTCCCCCACC CTATCCCTTC CCCCTATTAC
  TATTGAAGTT GTTGTGTCTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146392194	ENSMUSSNP3481328	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50008345					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27920794 () rs orientation: forward

Symbol	Name	Function Class
Col5a1	collagen, type V, alpha 1	Intron
Gm13372	predicted gene 13372	within coordinates
Rr553711	regulatory region 553711	1007 bp proximal
Rr553712	regulatory region 553712	1335 bp proximal
Tssr16891	transcription start site region 16891	1273 bp upstream
Tssr16892	transcription start site region 16892	1305 bp upstream
Tssr16893	transcription start site region 16893	1988 bp upstream