rs50008431 SNP Detail

Summary

• ID
  rs50008431
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152537308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCA AGGTGCACAG CTGTCCAGGC
  K
  CCTGGCAGAG ACTCTCCCCA CACAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147972027	ENSMUSSNP5579988	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss320563182	CHEV_2_152521124	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50008431					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152537308 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75645	predicted gene, 75645			within coordinates
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567432	regulatory region 567432			1537 bp distal
Rr567433	regulatory region 567433			1947 bp distal
Rr567434	regulatory region 567434			266 bp distal
Rr567435	regulatory region 567435			766 bp proximal
Rr567436	regulatory region 567436			1285 bp proximal
Rr567437	regulatory region 567437			1554 bp proximal
Tssr20823	transcription start site region 20823			375 bp downstream
Tssr20824	transcription start site region 20824			70 bp upstream
Tssr20825	transcription start site region 20825			119 bp upstream