rs50008658 SNP Detail

Summary

• ID
  rs50008658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69335276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCC CTTTGTCCCA CAAATGAGTT
  Y
  GCCTAGGGGT AAAAATGTGG GTGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss60627397	NES16288089	PERLEGEN	MM_PANEL2	f	SNP		C	C			T	T		C
ss145084094	ENSMUSSNP7030409	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss322692313	CHEV_8_71406523	CHEVERUD	SCREENING_POP	f	SNP					C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs50008658					SNP	C	C	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60627397	NES16288089	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69335276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	1000 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	within coordinates
Rr664456	regulatory region 664456	1023 bp distal
Rr664457	regulatory region 664457	522 bp distal
Rr664458	regulatory region 664458	668 bp distal
Rr664459	regulatory region 664459	within coordinates
Tssr77602	transcription start site region 77602	1982 bp downstream
Tssr77603	transcription start site region 77603	1952 bp downstream
Tssr77604	transcription start site region 77604	1907 bp downstream
Tssr77605	transcription start site region 77605	1894 bp downstream
Tssr77606	transcription start site region 77606	1723 bp upstream
Tssr77607	transcription start site region 77607	1789 bp upstream
Tssr77608	transcription start site region 77608	1810 bp upstream
Tssr77609	transcription start site region 77609	1845 bp upstream
Tssr77610	transcription start site region 77610	1916 bp upstream