rs50009047 SNP Detail

Summary

• ID
  rs50009047
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:127704325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCCTATT TTTGCGAATG
  GGTTTGCTTT TCTATTTTCA GTATAAGATC TCGCCACATG CCTTGCTTTT TAAGCCCTTC
  CTTTATTTGT TTTTGTGTCC TGGTTTGTTT GCTTTAAGCA AACATCCTTC TCAATGGTAG
  AATCTGTCTC TTCAAATTTG CCTAGTTAGC ACAGGGCACT TGCATGAAAC ACTTGGACTT
  R
  CAGTCGTCTA AAAGTTTGTT TGCCTTCCGC ATAGGAAGGA GGCTTGAGTG CTTAGTCTTT
  CCTAGCAGGG TAATTATCTG TTTGGGGAAA CAACATCATC CCTCTCACCT CAATGTCTTT
  CTGGCCTGTT TTGGCAGCTT AAAGGTGGTT TTAAATACTG TATCAGTAGC ATAGCCTCAG
  TAGTACTTCC CACACACCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60798934	NES16471901	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50009047					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60798934	NES16471901	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127704325 () rs orientation: forward

Symbol	Name	Function Class
Ccnt2	cyclin T2	Intron
Cpgi690	CpG island 690	1651 bp distal
Rr417685	regulatory region 417685	1541 bp distal