rs50009602 SNP Detail

Summary

• ID
  rs50009602
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139071497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGC CTAAGTAAAA ACAGACCCCA
  M
  GGAGGGCAGC GAGTACTAAG TCATT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147670761	ENSMUSSNP4901044	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
ss321381214	CHEV_4_138900101	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50009602					SNP	C	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139071497 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3-ps	cyclin D3, pseudogene	1114 bp downstream
Cpgi15166	CpG island 15166	1591 bp proximal
Gm13019	predicted gene 13019	853 bp downstream
Gm70501	predicted gene, 70501	within coordinates
Rr603197	regulatory region 603197	43 bp distal
Rr603198	regulatory region 603198	1522 bp proximal
Tssr44225	transcription start site region 44225	1809 bp downstream