rs50009951 SNP Detail

Summary

• ID
  rs50009951
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29301715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGAGGAT GGAAAGGGCC
  TGGACCCCTG AATCACCCCA CTCAGGGGTC CCCCGCCACC TAGAACACCT TCCCTGGATT
  CAGGAGTGTG GGAAATAATT TCCCTTCCCC TCAAAGTGTT TTTATTTATT TACTTATTTA
  TTTTTGTTGG TGTTTCAAGA CAGGGTTTCT CTGTGTAGCC CTGGCTGTCT TGGAACTCAC
  Y
  CTGTAGACCA GGCTGGCCTC GAACTCAGAA ACCCTCCTGC CTCTGCCTCC CAAGTTCTGG
  GACCAAAGGC AGGTGCCACC ACTGCCTGGT TCAAAGTATT ATCTTTTTTC TTTCTCTTTG
  GTTTTTCGAA ACAGGGTTTC TCTGTGTAGC CTTGGCTGTC CTGGAACTCA CTCTGTAGAC
  CAGGCTGGTC TCAAACTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145426491	ENSMUSSNP6025591	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50009951					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29301715 () rs orientation: forward

Symbol	Name	Function Class
Rr370203	regulatory region 370203	558 bp downstream
Rr524789	regulatory region 524789	207 bp distal
Rr524790	regulatory region 524790	1526 bp proximal
Tssr143493	transcription start site region 143493	1154 bp downstream
Tssr147178	transcription start site region 147178	1885 bp upstream