rs50010686 SNP Detail

Summary

• ID
  rs50010686
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34615367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGACTCT TTTAATGGAA
  AGACAAAGTT GGGTTGTTTG TGTGTGTGTG TGTGTGTGTT GGGGGGCAGA TGGAACATGC
  TCTTTGCTAA TAAATGGAAC GGGAATTTGG AAAGCTGGAG AGAGGAGAAG CCAATGGGTT
  GGTCACGGTT GTAGGCCCTA TCCGAGAAGT TTTGGAATCT GTACCTACAC AGACTGAAAG
  R
  GAGTCGCCCT ATAAGTTTAT TGGGTGAGAA CTGAAACTGG AAGCCAGGAG GACATGGACA
  TACTAAGATC ATAACAGGGA AAGCAGGCCT GGGAATTCAT GGGACAGGAA AGACTATGAA
  GACAGTGTAT CTCTTGTCTG AACCCCATAA AGCTTGGATA TTTAACAGTG AGATGGCCTG
  GCTCTATTCC AACCTATCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60592086	NES16319609	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50010686					SNP	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592086	NES16319609	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34615367 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20243	CpG island 20243	1018 bp distal
Leprotl1	leptin receptor overlapping transcript-like 1	1474 bp upstream
Rr661963	regulatory region 661963	1191 bp distal
Rr661964	regulatory region 661964	690 bp distal
Rr661965	regulatory region 661965	919 bp proximal
Tssr76862	transcription start site region 76862	1876 bp downstream
Tssr76863	transcription start site region 76863	1846 bp downstream
Tssr76864	transcription start site region 76864	1829 bp downstream
Tssr80897	transcription start site region 80897	1626 bp upstream
Tssr80898	transcription start site region 80898	1495 bp upstream
Tssr80899	transcription start site region 80899	1461 bp upstream
Tssr80900	transcription start site region 80900	1445 bp upstream
Tssr80901	transcription start site region 80901	1403 bp upstream
Tssr80902	transcription start site region 80902	1200 bp upstream
Tssr80903	transcription start site region 80903	1147 bp upstream