rs50011166 SNP Detail

Summary

• ID
  rs50011166
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105359058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGAGACCT GCTAGGCAGA TGCGTAGCAG CAAACACACT
  AGCTGTCTGA GAAACACCTT CTGGTGTGCT CTCAAGGTCG GGTTGGGACT CTGACTGTGT
  C
  CTTATTTTTA GGGAGCTTGG TTATCAAACA GCACCTTTGG AGCCATCTGG ATCCTTCTGG
  AGAAGTCTAT TGCACAGGTA ACCCAACAAA CAGACTAGG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147504718	ENSMUSSNP1332500	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50011166					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105359058 () rs orientation: forward

Symbol	Name	Function Class
4930588G05Rik	RIKEN cDNA 4930588G05 gene	843 bp downstream
Rr438484	regulatory region 438484	409 bp distal
Rr438485	regulatory region 438485	within coordinates
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates
Tssr99169	transcription start site region 99169	1402 bp upstream
Tssr99170	transcription start site region 99170	1180 bp upstream