rs50013244 SNP Detail

Summary

• ID
  rs50013244
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113393686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACTCTCT CCACATCCTG
  CCTTAGGCCA CCTGAACCCC ACAGTCCCCA GATGCAGGAC TCACCTGACC TGAGTGACCT
  GAGCCCCCTG GTCCTAGACA TCAGAGTAAT TATAGACCCA GTGAAGTAGC CCTTCATCTG
  GGGCCAACCA AACCCATCCC AAAGTCCCTT GGCGTCCCCA GTGGCATCCA AGCCTCAGAA
  W
  CTCAGATGTT TGGAGAGATC TCCACCTTAA TTCAACTGGA TGGGCCCATC TGTAGGATGG
  TAATCTTTCA GGCTAGCCTT GGCTAGCATA GTGAGACCTG TGACAAGAGA AGAAGGAAAC
  AGGAGAAGGA GAAAGGAAAC AAGAGAGGGA CCTGCACCTA TCCTGTCCTC TCAGTCAACT
  CCACCTGCCT GCTCTGTCCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138742406	ENSMUSSNP4257736	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50013244					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113393686 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	462 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	233 bp upstream
Ighj2	immunoglobulin heavy joining 2	551 bp upstream
Ighj3	immunoglobulin heavy joining 3	934 bp upstream
Ighj4	immunoglobulin heavy joining 4	1499 bp upstream
Tssr115504	transcription start site region 115504	161 bp upstream
Tssr118005	transcription start site region 118005	1519 bp upstream
Tssr118006	transcription start site region 118006	1488 bp upstream
Tssr118007	transcription start site region 118007	1442 bp upstream
Tssr118008	transcription start site region 118008	1415 bp upstream
Tssr118009	transcription start site region 118009	1404 bp upstream
Tssr118010	transcription start site region 118010	1266 bp upstream
Tssr118011	transcription start site region 118011	1168 bp upstream
Tssr118012	transcription start site region 118012	933 bp upstream
Tssr118013	transcription start site region 118013	918 bp upstream
Tssr118014	transcription start site region 118014	814 bp upstream
Tssr118015	transcription start site region 118015	718 bp upstream
Tssr118016	transcription start site region 118016	564 bp upstream
Tssr118017	transcription start site region 118017	224 bp upstream
Tssr118018	transcription start site region 118018	310 bp downstream
Tssr118019	transcription start site region 118019	327 bp downstream
Tssr118020	transcription start site region 118020	383 bp downstream
Tssr118021	transcription start site region 118021	523 bp downstream
Tssr118022	transcription start site region 118022	555 bp downstream
Tssr118023	transcription start site region 118023	720 bp downstream