rs50013427 SNP Detail

Summary

• ID
  rs50013427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:143831428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACATGGT GAGTTCTAGG
  CCAGCCTGGA CTATAGAGTA AGCCCAGCCT CAAACAAACA GAAAATCTAG GAAGGTGTGT
  ATAGGAAGTG AAAAATAATT CACCTTACAT GACATCGTCG CTGTGGGTGT GTTCTGAGAG
  GAGGAGGGTA CCCTTCTTCC AGCCACACAA GCTGTGTTCC ATCCATCCAT CTGTGTGTGG
  Y
  GCAGGATGGA GGAGTTGCAG GCTAGGGTAT GTGTACTGGA CCTGGGGGAT GGTCTGCGGA
  GCCCTATGTT TTGTGAAGTC CTCCAAAGTT CTGGGGTTAA AAGGGTGTGC CACCGCTTCC
  CGCTCTGTTG TTTCTTTACT GTGACAGAGA GGAGGGAGTA CCTGGCTCAG TAGTCTGTAA
  CGGGTGGAGT TGGCCAGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60852798	NES16000981	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50013427					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852798	NES16000981	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143831428 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ankrd61	ankyrin repeat domain 61			Intron
				mRNA-UTR
Eif2ak1	eukaryotic translation initiation factor 2 alpha kinase 1			Intron
Tssr54383	transcription start site region 54383			376 bp downstream
Tssr54384	transcription start site region 54384			415 bp downstream
Tssr54385	transcription start site region 54385			468 bp downstream