rs50014069 SNP Detail

Summary

• ID
  rs50014069
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174313868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTTCGGA TGTAAGTCAA
  CAATAACTAT GACAAGATGA CATTGTAGAA TAGAGCACAA TAAATCAGTC AGAAAGGAGG
  GCTGGAACAA GGCGTAAACC AGTTATTTAG GTAGAAAGCT CTGTTGTTCT TGTGTGTGGC
  ACCATGAACC TGGGTGGTAT AATTCCCAAC ACCCCACTGA CTCTGATCCT GTTTCCCACT
  A
  TAAGTTCAGA GAACCATAAA GCTGTGACTG GATGTGATAG CAGACACTGG CTATCAGTCA
  GCTGTCATGG CTGAGAGGAA TAGGAAACAG AGGTGACAAA TTATCTGCAA GAGCAGGCCC
  TGGTCTCTAG ATCAAGAGAT CTTGATCAAG AAATCAAGAG ATCTGCTCTC CAGATTGACT
  GTCATCAATG TTTGGCATCA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148343895	ENSMUSSNP4949810	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50014069					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174313868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	243 bp proximal
Gm38546	predicted gene, 38546	1014 bp upstream
Prelid3b	PRELI domain containing 3B	within coordinates
Rr397557	regulatory region 397557	802 bp upstream
Rr572131	regulatory region 572131	1148 bp distal
Rr572132	regulatory region 572132	759 bp distal
Rr572133	regulatory region 572133	within coordinates
Rr572134	regulatory region 572134	527 bp proximal
Rr572135	regulatory region 572135	813 bp proximal
Rr572136	regulatory region 572136	922 bp proximal
Rr572137	regulatory region 572137	996 bp proximal
Rr572138	regulatory region 572138	1121 bp proximal
Tssr28035	transcription start site region 28035	803 bp downstream
Tssr28036	transcription start site region 28036	874 bp downstream