rs50016130 SNP Detail

Summary

• ID
  rs50016130
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:127498754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTACCT TACCTTCCTT
  TTCTCACCTC TAAGCACCTC CCTACCTAGG GCAACCCAGA AGGTCTCTGC CTGCTCACAC
  ATTGACATTC CCTGCTCACC TTATGTTGTT GTCAAACCAT GTTGCTTTTC TGTGGAAGTG
  CATACTTCAA AAATCATACC TGAAGATGAA TTCTGTACTG ATGGGATAGT GATCACTAGT
  S
  TCTCACCAAT GATCTCCCCT TACCCTGGCC ATGCATTTAA CATCATCACT CAGTCACAGC
  AAGCAAACGA AAGCTTAGAA TGTGGTAAGT CCAAGGTTAA CAAGCTAATC ATGATATAAG
  TCTATGTCTT CCCAGAGTCC AGCACCTGTG AGTGCTCTCA TGCAGGAATA TCTATACACA
  TGAGGAGTGG CAAAAGAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60942678	NES16167487	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50016130					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60942678	NES16167487	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:127498754 () rs orientation: forward

Symbol	Name	Function Class
Rr380087	regulatory region 380087	420 bp downstream