rs50016196 SNP Detail

Summary

• ID
  rs50016196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77039534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATGGTAC CACCCACAAT
  GGGCTGGGCC CTCCACCATC AATCACTAAT TAAGAAAATG CCTTACAGAT GGATCTTATG
  GGGCATTTTC TTAACTGAGG TCCCCTCCTA TCAGATGACT CAAGTAGACA TAAAACTAGC
  CAGCATGTTG CCTTCAAAGC TCATGGGTTT GGGTGGGTCC TGGGTAAACT TTGTAGGCAT
  Y
  GAGGATCAGA ATGAGGGCAT AGGGCATCTA TCGTTCTACC CACAACAGGA ACAGATTAGA
  ATGCAAAGTT CCTGGCATTG TCAGACAAGA AAGTAGTAAT TCTTAAAAGT TAGCCTCTTA
  AAAGTCAAGG GAAGCCTGTC ATGTCTAAGC AACTGTTAAT AGAACAATGA GAGGCAGTTA
  GCAAGCAAAC TGTGTGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52373189	NES15266559	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50016196					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373189	NES15266559	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77039534 () rs orientation: forward

Symbol	Name	Function Class
D10Jhu60	DNA segment, Chr 10, Johns Hopkins University 60	1149 bp proximal
Rr384958	regulatory region 384958	555 bp downstream
Tssr94215	transcription start site region 94215	1513 bp downstream
Tssr94216	transcription start site region 94216	1487 bp downstream