rs50016792 SNP Detail

Summary

• ID
  rs50016792
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117430215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCCTGGA CGGCCTGGCT
  CCGGCGTTTT GCAGTGCGAG CCCTTGAGAG GATGTGAGTC TCGGGACACC GGCACCCTGC
  CTGCTGCCTT TGCATCCCGT CCTGTGCGGA CCACCATGGA CGTGCAGGCG CAGAGGCCAC
  CTTTGTTGGA AGTGAAGAGG AATGTAGAGC TGAAGACAAG CCTGGTCAAG TTCTCCTCCC
  R
  AGTGCCCCGT CAGCAAGCAG GCTCAAGAGA GGTCCTGACC AGATGGAGGA TGCCTTGGAG
  CCCGTAAAGA AACGGACACG AGGCATGGGT GCAGTGACCA AAGTTGACAT ATCCCGTCCC
  AGAGGACCAC TCTTCAGCAC AGTGTCACAG ACCCAGGGCC ACACTGCAGC TCAGAAAGGC
  CCTAAGAAGG CAGGACCTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61320218	NES16929025	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50016792					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61320218	NES16929025	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117430215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2233	CpG island 2233	within coordinates
Gm63651	predicted gene, 63651	416 bp upstream
Kifc5c-ps	kinesin family member C5C, pseudogene	43 bp upstream
Rr402265	regulatory region 402265	1511 bp upstream
Rr439564	regulatory region 439564	1374 bp proximal