rs50017448 SNP Detail

Summary

• ID
  rs50017448
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56265992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTGTGAC AGTCATTTCT
  CTTGGGCTTA CCTCTGCCCA GGGCCCATAG TCTCAGGCAG AGTTTTTCTA GTTTCTGGCT
  TGCTCCCCAC CCTGGGAGCC TATCTGAATC TGCCTGGTGC TAGAACTAGT AGCTGTCTCA
  GGCTCCCCTT TTTCAGGGAA TATTAAGCTA CTAGTCATTC AGATATTCAC AGATCAGAAC
  M
  TAGCACATAG ACATAGCCTC TCTCCTGCCA CCTACTGACG CGCATGTGAC ACAGCAGTCA
  CAACTGCAAG GCCTCTGGGG GAAGGGGCTT CAGGTTTCTA AGCCCACCTT GCTGCTTCTC
  TTTCTCCTTC CTTCTCCCCT CCTGTCACCC ACTCTGAGAC CTGGGTTTTC TCACACACCC
  ATAAAGTGAT GCATCCATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60315634	NES15822300	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A		C	A	A	C		A
ss325856841	CHEV_19_56352050	CHEVERUD	SCREENING_POP	f	SNP								A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50017448					SNP	A	A	A	A	A	A	A	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60315634	NES15822300	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56265992 () rs orientation: forward

Symbol	Name	Function Class
Gm22271	predicted gene, 22271	within coordinates
Gm32257	predicted gene, 32257	within coordinates
Rr549993	regulatory region 549993	187 bp distal
Rr549994	regulatory region 549994	22 bp proximal
Rr549995	regulatory region 549995	442 bp proximal
Rr549996	regulatory region 549996	468 bp proximal
Rr549997	regulatory region 549997	532 bp proximal