rs50017857 SNP Detail

Summary

• ID
  rs50017857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126838422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGCACTG ACTGCTCTTC
  TGAAGGTCCT GAGTTCAAAT TCCAGCAATC ACATGGTGGC TCACAACTAC CCGTAATGAG
  ATTTGACACC CTCTTCTAGT GTGTCTGAAG ACAGCAACAG TGTACTTATT TATAATAATA
  AGTAAAAAAA TTTTTTAAAG AAATTCTATC TGGAGAAAGG TATTTCAAGT ATTGACTTAT
  Y
  AAAAAATTGC TTTGTGCTTC TCCTGTGAAT TTTAGTCTGA GAGAGAGAAG GCAATAGGAG
  AGAATAGGAT CAACAAATCA TAGCCAGGAT TGGGGTGCCT GAAATCTAGT CCTAGCACCT
  AAGAGGAGGT AGAGGCAGGA GGATAAAGCC ATGGATTTGA GGCCAGCCTG GTCTACACTG
  TGAGTTCTAG GAAAGCCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147516199	ENSMUSSNP6754099	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320498727	CHEV_2_126822238	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50017857					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126838422 () rs orientation: forward

Symbol	Name	Function Class
Rr564430	regulatory region 564430	1736 bp distal
Rr564431	regulatory region 564431	167 bp proximal