rs50018343 SNP Detail

Summary

• ID
  rs50018343
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148515880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGCCTG GTCTACAAAG
  TGAGTTCCGG GACAGCCAGG GCTACACAGA GAAACCCTGT CTCGAAAAAC CAAAAAAAAA
  AAAATGTTGG CCCAGGCATG GTCGTGCACA CCTTTATTCC CAGCACAAAA GGCAGAGGCG
  GATGTCATGA GTTCAAAGCC AGTGTGGTCT ACATAGAAGT GGCAGAAATA CATAGAGAGA
  A
  CGTGTCTCAA TAAAATAATA AAGGCTCTTG AAATGAAAAA GCATGTGTTC ACAGCTTAAA
  GTTTTAAGCT TACTCTGTAG AGACCCTGTT TCTGGAAATT GGCAAATAAT ATAAATTACT
  TGTGTCCTAT TTTCAGTAAT ATTGATCAGT ACTAGGTTCT TTTAAGTGGA AATAGTTAAC
  CATAGAAAAA ATTAGCAGCC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147930959	ENSMUSSNP4291450	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50018343					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148515880 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12399	CpG island 12399	892 bp distal
Gm75182	predicted gene, 75182	637 bp downstream
Nxt1	NTF2-related export protein 1	within coordinates
Rr397374	regulatory region 397374	1272 bp downstream
Rr566945	regulatory region 566945	1324 bp distal
Rr566946	regulatory region 566946	1454 bp distal
Rr566947	regulatory region 566947	113 bp distal
Tssr20647	transcription start site region 20647	1238 bp downstream