rs50019989 SNP Detail

Summary

• ID
  rs50019989
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:70167773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAATGGTT AAGAACACAG ATGCTGGTCT GGAGAGATGG
  CTCAGCGGTT AAGAGCACTG ACTGCTCTTC CAGAGGTCCT GAGTTCAAAT CCCAACAACT
  M
  CATGGTGGCT CACAGTCATC TATAATGGGA TCTGATACAC CTCTACTGGT GTGTTTAAAG
  ACAGTGTACT ATATACATAA AATAAAAAAA TAAATAAAT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145111226	ENSMUSSNP6362385	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss322696629	CHEV_8_72239022	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50019989					SNP	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70167773 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm64048	predicted gene, 64048			1435 bp upstream
Rr400882	regulatory region 400882			1217 bp upstream
Rr400883	regulatory region 400883			1742 bp upstream
Rr664553	regulatory region 664553			945 bp proximal
Rr664554	regulatory region 664554			1446 bp proximal
Rr664555	regulatory region 664555			1691 bp proximal
Tssr77669	transcription start site region 77669			1457 bp upstream
Tssr81531	transcription start site region 81531			1292 bp downstream
Tssr81532	transcription start site region 81532			1314 bp downstream
Tssr81533	transcription start site region 81533			1704 bp downstream
Tssr81534	transcription start site region 81534			1727 bp downstream
Zfp869	zinc finger protein 869			Intron
				Noncoding-Transcript-Variant