rs50020254 SNP Detail

Summary

• ID
  rs50020254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44466572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCAAGT ACTTGTAGAG
  CGCTGTATAC GCGCACAGAT ATATCAGCTA TGGAAAGTAG GCCACGAAGT CCTAACCACG
  AGACTCTTCA ACATATTTTT GTTTGTTTTG TTTTAACATT TATTGTGGTG GTCAGAGGAG
  AGCTAGCAGG AGTTGGTTCT CTGACCATGT GAGTCCCAGG GACGGAACTC GGGTCAAACT
  R
  TTTGGCAGCC TTTACCCACT GCTCAGTCAT TGTATTTTCT TTTAGAAAAA AACCCTGACT
  TCACCTCTTT TACTCTCCCT ACCCCAGATT CTTAGCCATA TGATCGTTCT GTGTGTCCCA
  CCTCCAAGGT TTCTGTTTCC AGCCATCCCT GCCGACCTCT AAGGTTTTGC CCTTGCTCTG
  ACTTTCTTGC AGTCCTTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149123060	ENSMUSSNP6353875	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50020254					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44466572 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	490 bp upstream
Cpgi18994	CpG island 18994	94 bp distal
Il4i1b	interleukin 4 induced 1B	within coordinates
Nup62	nucleoporin 62	within coordinates
Rr400297	regulatory region 400297	1075 bp downstream
Tssr66426	transcription start site region 66426	1208 bp downstream
Tssr66427	transcription start site region 66427	840 bp downstream
Tssr66428	transcription start site region 66428	814 bp downstream
Tssr66429	transcription start site region 66429	773 bp downstream
Tssr66430	transcription start site region 66430	742 bp downstream
Tssr72230	transcription start site region 72230	1491 bp upstream
Tssr72231	transcription start site region 72231	1466 bp upstream
Tssr72232	transcription start site region 72232	1222 bp upstream
Tssr72233	transcription start site region 72233	540 bp upstream
Tssr72234	transcription start site region 72234	182 bp upstream