rs50020523 SNP Detail

Summary

• ID
  rs50020523
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57171926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTC CTGCGCAGGG GCTCAGGCAG
  A
  TGAAGGTAGG CCTTTCGAGG TGACT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136517963	ENSMUSSNP4875706	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss322971871	CHEV_9_57112450	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50020523					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57171926 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21813	CpG island 21813	1741 bp distal
Gm68485	predicted gene, 68485	621 bp downstream
Gm68491	predicted gene, 68491	within coordinates
Rr679624	regulatory region 679624	1541 bp distal
Rr679625	regulatory region 679625	501 bp proximal
Tssr89772	transcription start site region 89772	1846 bp upstream
Tssr89773	transcription start site region 89773	1146 bp downstream
Tssr89774	transcription start site region 89774	1164 bp downstream