rs50020654 SNP Detail

Summary

• ID
  rs50020654
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127203189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACCTCAT CTGCAAAAGC
  CACCGACACT GCCCAAACCA CCTTGCAACA CATCATCCAT CTCGTGCATG CATGCGTGTG
  CCTGTGCGTG AGTGTGTGCG TGTGTGTGTG TGCATACTTT AAGCAAGTCA TCACAGTATG
  GTTCATGGAA GGCCTCAGGG ACATAACCAT TAGACTTGGT GCAGCATGAA GTTCTAATCA
  Y
  GAGAGAGCTC ACCTATAGTC CAACCAAAAT ACACTTACAG ACCCACACAG CAAATGGGCA
  GGGGGAAATA GAGAAAGCCT ATTTGCACTG AATGCATTTA GCCACCAACC ATTTATTTAA
  TCACCCATAA ATCACCTGAC AACAAGGAGC CTATCAAAAT GGGGGAGGGG GGAATGCATA
  TTTCTATTTC CATTCCTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135862674	ENSMUSSNP3200474	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320953865	CHEV_3_127112458	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50020654					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127203189 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	625 bp distal
Gm52631	predicted gene, 52631	within coordinates
Rr584773	regulatory region 584773	584 bp distal
Rr584774	regulatory region 584774	within coordinates
Tssr35571	transcription start site region 35571	653 bp upstream
Tssr35572	transcription start site region 35572	559 bp upstream
Tssr35573	transcription start site region 35573	532 bp upstream
Tssr35574	transcription start site region 35574	497 bp upstream
Tssr35575	transcription start site region 35575	476 bp upstream