rs50021968 SNP Detail

Summary

• ID
  rs50021968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:59036678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTTCGCTC TGGCAGTACT GCCTCTCATT TACTGAGTTA
  CTAGTGCAGA GGATGGGAAA AGAAGTAAAT TTTTATTGAA CAGCTGCTAT GGGCAAGATA
  Y
  ATAAGCCTTA GGGGTTTTTT TTTTTTTTAA TTGTTGATAT CTATTTGCTT AAATAGGTAC
  TAGGACAGAG GTGAAGCGGG TTAAAAAGTT AAAAACCCAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60415197	NES15910247	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50021968					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415197	NES15910247	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59036678 () rs orientation: forward

Symbol	Name	Function Class
Med12l	mediator complex subunit 12-like	within coordinates
P2ry14	purinergic receptor P2Y, G-protein coupled, 14	within coordinates
Tssr33381	transcription start site region 33381	1274 bp downstream
Tssr33382	transcription start site region 33382	1317 bp downstream
Tssr33383	transcription start site region 33383	1353 bp downstream
Tssr33384	transcription start site region 33384	1372 bp downstream
Tssr33385	transcription start site region 33385	1389 bp downstream
Tssr33386	transcription start site region 33386	1423 bp downstream
Tssr33387	transcription start site region 33387	1493 bp downstream
Tssr33388	transcription start site region 33388	1805 bp downstream
Tssr33389	transcription start site region 33389	1826 bp downstream
Tssr33390	transcription start site region 33390	1865 bp downstream
Tssr33391	transcription start site region 33391	1970 bp downstream