rs50022111 SNP Detail

Summary

• ID
  rs50022111
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95940552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCGGAATA GACCAAGCAT
  GCGGTAAAAA GGTCAGAGAC AAAAACACAC CAGGTCTGTG CCTTCAACAC TAGGTTTCTT
  CAGCCATTTT TGTAGTTTTT AATCTAACAC TGGAGCAGGC GTCAGAGCCG TGCAGTCGCT
  TGAAAACCTG CAGCACTTCG GTGTCTTCCA AAACATTGTG TATGCTTCCT GTCTTCATGG
  R
  CGTTCATCTG CCCATTCTTG CTTGGTTGAT GGTAGCATAC ACAGTAAGGC CCTGAATGCC
  AACTTTGACA CAGTGCCAGC TACACAGCAA GTGTCTGACC TACGTTTAAC TAAGCACCAT
  GGTTTAGAAC TAACAACAGT CTCTGTAAAA GACCTGGGAG TTGCTGATCA GAGCCCCAAT
  GGTGGGGATT CTTGACAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144995944	ENSMUSSNP913652	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50022111					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95940552 () rs orientation: forward

Symbol	Name	Function Class
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr277718	regulatory region 277718	49 bp proximal
Rr285448	regulatory region 285448	1449 bp proximal