rs50022480 SNP Detail

Summary

• ID
  rs50022480
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29895198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG TACATAACAA GTTTGTGACC
  R
  GCTTGGGCTA CATGAGACCC TAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148668738	ENSMUSSNP4570188	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss322132210	CHEV_7_30980792	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50022480					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29895198 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18782	CpG island 18782	1732 bp distal
Cpgi18783	CpG island 18783	457 bp distal
Gm26810	predicted gene, 26810	within coordinates
Rr380605	regulatory region 380605	864 bp upstream
Rr400232	regulatory region 400232	1868 bp downstream
Rr400233	regulatory region 400233	437 bp downstream
Tssr65662	transcription start site region 65662	1816 bp downstream
Tssr71702	transcription start site region 71702	1954 bp upstream
Tssr71703	transcription start site region 71703	1740 bp upstream
Tssr71704	transcription start site region 71704	1633 bp upstream
Tssr71705	transcription start site region 71705	1611 bp upstream
Tssr71706	transcription start site region 71706	742 bp upstream
Tssr71707	transcription start site region 71707	730 bp upstream
Tssr71708	transcription start site region 71708	683 bp upstream
Tssr71709	transcription start site region 71709	548 bp upstream
Tssr71710	transcription start site region 71710	204 bp upstream