rs50023313 SNP Detail

Summary

• ID
  rs50023313
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52741517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTTATAG TAGTTAACTG
  TGTGCCTGAC AGCTCCCTGT AGAATATTCC AACTTCAAAT TAAACCCAAC ATTAAATCCA
  GGTCATTATG TTTCCCCTTT TCTCTCTCTT TTCTGGATTT CCTATTTCAG AGCTACCTGG
  ACACATCAGG GTCTGTAACC TCCCTCTTAC TGATCCAGTC CATCAGCTTC ACCTTCCCAA
  M
  GTGTGTCTGT CAATTTCTGC TGCTACTTCT GCAGTTCAGA CAGTTCCTGC CTCACACAGG
  GACTCTTTAA GAATGTTCTC TGTAGGCTCC AACTTCAGAA TTGGCTATAG GCCACACTCT
  GTAGTGTAGT GACCACCTCA TGTAAAAAAT GAGATCTTGT TTGCATTGAA CCTTGCTATG
  ATTCCCATCT GCCACCAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60731912	NES16372452	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	A		A	C	C	A		C
ss149119703	ENSMUSSNP5290602	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss319721176	CHEV_1_52759202	CHEVERUD	SCREENING_POP	f	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50023313					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60731912	NES16372452	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52741517 () rs orientation: forward

Symbol	Name	Function Class
Gm29670	predicted gene 29670	within coordinates
Mfsd6	major facilitator superfamily domain containing 6	within coordinates