rs50024935 SNP Detail

Summary

• ID
  rs50024935
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70989701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAACG AGGACACCTC
  AGTGAAAATG CGGGCACTGC AGAGCTCAGC CAAGGGCGGA ATGCACTTGC AGCCATCAGA
  CTCTGCTGGT CCTAGCGCCA GGACTCACCT GCTCACTGAC CTGCGCCAGC AGCAGCACCC
  AGAGCGCAGC ACAACCTCGG GACTCCATGG CCCCGGTGCC CGAGGGCTCA CAGGACTCAG
  M
  TCAGCAGTCT AGACTGGGTC ACTGGATAGT CCCGGTGTTA GCAGTATGCT AGGGTGCAAA
  GGACCGACCC GGCAAAATCG CAGGGTTTCC AGGCAGCGAT TCCACCATGC ACATCAGAGT
  TATCACTGCA GCTTCGTTCG GCACCGGGAG GTGGAGTGGC AGTGGTGGCG GGGGGCGGCA
  AAGCACCCGC AGCAACCAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52651864	NES15472156	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	A		C
ss324417474	CHEV_13_70980460	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50024935					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52651864	NES15472156	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70989701 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Cpgi5821	CpG island 5821	within coordinates
Gm36529	predicted gene, 36529	within coordinates
Rr482298	regulatory region 482298	1427 bp distal
Rr482299	regulatory region 482299	1122 bp distal
Rr482300	regulatory region 482300	1195 bp distal
Rr482301	regulatory region 482301	922 bp distal
Rr482302	regulatory region 482302	872 bp distal
Rr482303	regulatory region 482303	140 bp proximal
Rr482304	regulatory region 482304	219 bp proximal
Tssr123158	transcription start site region 123158	121 bp downstream
Tssr123159	transcription start site region 123159	147 bp downstream
Tssr123160	transcription start site region 123160	180 bp downstream
Tssr123161	transcription start site region 123161	208 bp downstream