rs50027065 SNP Detail

Summary

• ID
  rs50027065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30733631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCA CTTTGCCCAC CAATACCTCC
  Y
  AAACCCATGG ATCTCTTCTT AAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148696769	ENSMUSSNP6306834	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss322138568	CHEV_7_31819225	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50027065					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30733631 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Rr644978	regulatory region 644978	within coordinates
Rr644979	regulatory region 644979	539 bp proximal
Rr644980	regulatory region 644980	797 bp proximal
Tssr2191	transcription start site region 2191	1254 bp downstream
Tssr65829	transcription start site region 65829	1283 bp downstream
Tssr65830	transcription start site region 65830	1022 bp upstream