rs50027115 SNP Detail

Summary

• ID
  rs50027115
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63218417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACTTGG AAGAATCTTA
  AAGGGAAGAC GGGAGCTGAC ACCATTTGCA CGGAACTTTG GGGCGCGCTC GGAGGAGACA
  GGTGGGAGAG GGGTGGATGT CAGTGGGTTG TGGGCTGGCC AATGTCTTGT CTGCTCTCAG
  AGCTTCTGAG GTTTGTAGTC ACTTATTTCT AGGATCAAAG ATGAATTTCA CGTAAACACC
  M
  CTTTTAGCTG ACACGCCTAA AAATGCTGAG GCAGGGGGAT GGTCTGAAGC TAGAGAATAT
  CCTGGATTAG CAACGTTGGC GCGGGTCTAG GACACAGACG CAAAATCTGC AGCAACTAGA
  GAGGCACGAG AGTCTCGGAG GCCGGAAGTT CTGGCAGTCC CCGTCGTTTC TTTTATGAAG
  TAGCGCTATG CCTTATGGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52347167	NES15278319	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	C	A		C
ss323333516	CHEV_10_62845386	CHEVERUD	SCREENING_POP	f	SNP										A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50027115					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52347167	NES15278319	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63218417 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1649	CpG island 1649	783 bp distal
Cpgi1650	CpG island 1650	within coordinates
Dnajc12	DnaJ heat shock protein family (Hsp40) member C12	within coordinates
Gm66647	predicted gene, 66647	within coordinates
Rr215754	regulatory region 215754	184 bp proximal
Rr224928	regulatory region 224928	within coordinates
Rr369009	regulatory region 369009	within coordinates
Tssr97916	transcription start site region 97916	106 bp downstream