rs50028517 SNP Detail

Summary

• ID
  rs50028517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:75699517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGACGAG GAGCTGGCTC
  TTCATAGACA ATCTAGAAAT AAGAATAGCA CTATTATACC TGATACCTTG TTTTCAGTCT
  AGTGAGCCTG TGTGAACCTT TCACCTATTG AGCTGTAAGA TAACTGGGTA TTGTTTGATG
  TGACTGAGTT TGTAACAATA GAAAATTAAA GCTGCTTAGA AGCTTAAAGT CTGAACTAAC
  R
  CAAAAGTTTC AGCTGATATT CACGTAGGAG AAATGGTTGG GCTGTCTCAA GAAAAAATGC
  TTAAGGGCTT GAGAGAGGGC TCACGCAAGC ATAAGGACAG AAGTTTGATC CCCAGGCATA
  GTGACGTGTA CTTGTAATCC CAGTGCTGTG TAGGAGACAG TCAGATCCCT AGGGCTTGCT
  AGGCCATCTA GGCTAGCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62907416	NES17398020	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50028517					SNP	A	G	G	G	A	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62907416	NES17398020	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:75699517 () rs orientation: forward

Symbol	Name	Function Class
Ltbp1	latent transforming growth factor beta binding protein 1	10 bp downstream
Rr392951	regulatory region 392951	807 bp upstream
Rr531033	regulatory region 531033	63 bp distal
Tssr145877	transcription start site region 145877	1558 bp downstream