rs50028991 SNP Detail

Summary

• ID
  rs50028991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:61500142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCATAAA AGATTGAAGT
  ACTAAAGAGG AAGGTGTCAC AGCCCAGCAC CATACAGATG AGTAGCATGT GGTGCTATCA
  TATTGCACGG AGAAGACAAT AATTGAAACT GAATGAAGTC ATGTCAGCTA AAAATGTCAA
  ATACAGGAAT TTTCATATAA TCTTTTAGGC TACAGTTGCT TGTATAAACA GACAAAAACA
  R
  CTATGAAATA GCATCCATCA CAAAGGAGGC ACCCATTCTT CCTCCTATAA TATCGGCACC
  GCAGTAAGGT CTATCATCAA GAACAATTTT GTGTTTGAAC ACAAAAATGT TACTGGACAA
  AAGTAGAAAA GGTAACTTTG TAGTTAACTT TTATTTTTAA GAACAGCATT TGGTACAGTG
  AAAAAAATAA AATAAAGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61823459	NES17746803	PERLEGEN	MM_PANEL2	f	SNP	G	A	G		A	G	G		G
ss324370728	CHEV_13_61453689	CHEVERUD	SCREENING_POP	f	SNP				A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs50028991					SNP	G	A	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61823459	NES17746803	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:61500142 () rs orientation: forward

Symbol	Name	Function Class
Cts7	cathepsin 7	133 bp downstream