rs50029004 SNP Detail

Summary

• ID
  rs50029004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:89602995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCATCTT TCATTTTTCT
  TTCCCAGTTT GGTGTTATAC TTAACAGAAA CTTGGATGCA AACCAGTTTA GTAGTCTATA
  AGAGCTTATT TCCTATTGAT AATTATGTTC TTAGTAACTG TAAAGCTGCA GCAATAGTTG
  GTTCCTCTTA CTTACTTTGG TGTGGGAAGA GGACCTGGGA AGGTCAGCTG CAGGTTAGCG
  Y
  TGCTTCTGTT TCAGTTCTTG GGAAAGAACA TGGATCAGCC AGCAAGAACT GCCTCTGCAC
  GTCTTGGGCC AGCTGAAGTG TCTGGTTTTC TATGACTTGG TAGATTTCCT AAGTCAGTTT
  CCCCGAGATA AACCTAGTTC CTAAGAGGGA GAACTTTGTG TTGTGGCACA GCGGGTTTAG
  GCCCAGTTTG GAAACTGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61194480	NES16707129	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50029004					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194480	NES16707129	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89602995 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	Intron
Rr614258	regulatory region 614258	481 bp proximal
Rr614259	regulatory region 614259	578 bp proximal