rs50029160 SNP Detail

Summary

• ID
  rs50029160
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115222341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCTCTG TAATTCTTAC
  TGTTCTTGTG ATTTTTTTTT TCTTAAATTT GTAGTTATTC ATCCCCGTTG CTGCCCTTTG
  TTTTCTGTGT TTGTGTGTGT GTGTGCACGC GCGTGTGCAG ATCCTTTATT TTTACCAGTT
  TTACAATTCA GCTCTTTTAA ATTCATAAGT AGTTTGGAAA GCTATATGCA TTAAGTTCAC
  K
  CTCCTATGTT GGCTTTTTGG CTTTATAACT TTTTGTGTTG CTGACATGTA GGTCAGAGAA
  AGATAAACTT CCCAGCACTT TAAGCTTAGT GTGTTAGAAA AGGAGAGATG GATAGGGAGG
  GTATGGGCTA GTGGAGAAGA AATGTCCTAA TTTCTGCACC CTCTCACCTT ATTCTCAGTT
  ATCTTTAACA TTACTAAGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss52214177	NES15331640	PERLEGEN	MM_PANEL2	f	SNP	T	T		G
ss323484733	CHEV_10_114823492	CHEVERUD	SCREENING_POP	f	SNP			T		G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs50029160					SNP	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52214177	NES15331640	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115222341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	429 bp distal
Rr402239	regulatory region 402239	1407 bp downstream
Rr439215	regulatory region 439215	1467 bp distal
Rr439216	regulatory region 439216	1456 bp distal
Rr439217	regulatory region 439217	1193 bp distal
Tssr95814	transcription start site region 95814	1487 bp downstream
Tssr95815	transcription start site region 95815	1415 bp downstream
Tssr95816	transcription start site region 95816	1379 bp downstream
Tssr99333	transcription start site region 99333	1927 bp upstream
Tssr99334	transcription start site region 99334	1874 bp upstream
Tssr99335	transcription start site region 99335	1640 bp upstream
Zfc3h1	zinc finger, C3H1-type containing	within coordinates