rs50030053 SNP Detail

Summary

• ID
  rs50030053
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54871404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAC CAAGAACATA TGTGTTCACA
  T
  AGAAGATATG AATATTATAC AATAC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss139567047	ENSMUSSNP4935624	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss324638727	CHEV_14_55252784	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs50030053					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54871404 () rs orientation: forward

Symbol	Name	Function Class
Cdh24	cadherin-like 24	within coordinates
Cpgi6468	CpG island 6468	1335 bp distal
Rr289238	regulatory region 289238	197 bp proximal
Rr295556	regulatory region 295556	317 bp proximal
Rr299444	regulatory region 299444	404 bp distal
Rr299445	regulatory region 299445	797 bp proximal
Tssr128611	transcription start site region 128611	1658 bp upstream
Tssr128612	transcription start site region 128612	1633 bp upstream