rs50030216 SNP Detail

Summary

• ID
  rs50030216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112453040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACAAACA GCTCCGTAGT
  CCACCTGTCA CCGTCGGCAG CTTCCTGACC CAATCAGGCT TCTTCCCAGG GGTCACTACC
  AGCATCTTTG AATGTGCACG TATTACTAGA AAGTAGGTCC CTCTTTTAAG TTGGGGCCTT
  AGTTCCAACA CCCAGAGACC CTGGGAATCA TCTTAACAAA ATGCCCTGAA TTATGTGAAG
  R
  TCTGTAACAA AATCTAAGTG ATATATGGCT TCATTAGTTG CCTTCATCAA CAAGAGCCCT
  ATTTTAAATA TATACCCCAG ACATGTAATA CTGTCTAAAT AAGCTAACAT TTTTTTAAGT
  GGAGCAGAAT AAGTAGCAAG TACTAAAAAA TGCTTACTAA ATGCCAGGTT GCTGTTAAGC
  ACACAGGATT AATTTTAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52696800	NES15533145	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50030216					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696800	NES15533145	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112453040 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
Tssr121103	transcription start site region 121103	1883 bp upstream
Tssr121104	transcription start site region 121104	1910 bp upstream
Tssr121105	transcription start site region 121105	1941 bp upstream