rs50030481 SNP Detail

Summary

• ID
  rs50030481
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130133975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGAACCT GAATCCAGAG
  CCTTGTGCTG AAAGAGTACC TGAAATAGGA GGGAAAGTCT TAAAGCAGAA AGCTCGGGAG
  AAGGAACCCA GAAACCATCA AGGGCCGACT AGAAAGCCCA ACGTGGATGA GCGGGGCAGA
  GGAACTGGCA GCAGGATGGA CTGACACTTG GTGCTGCTAG GGGCATAGCC CAGCCTGACT
  Y
  GCCAGACGAT GTAATAGCTC CTTGGGTGTA AAGCATAGGC CAAGCCACAC CAAAAATATT
  TAACCATTTT TTAACCCACG AAAGGGAAAA AAATTTCATC TCGGGACAAC CTATCTGTTG
  GCTTGGCCAG CTAACTTTAC AACTAAAGAG ACATAAAAAA CACTATGTTA TCTATCAGGC
  ACTAACATCC TATGTAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61062480	NES16062241	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50030481					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61062480	NES16062241	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130133975 () rs orientation: forward

Symbol	Name	Function Class
Gm57247	predicted gene, 57247	802 bp downstream
Nsmce4a	NSE4 homolog A, SMC5-SMC6 complex component	281 bp downstream
Rr381489	regulatory region 381489	40 bp downstream
Rr656294	regulatory region 656294	998 bp proximal
Rr656295	regulatory region 656295	1212 bp proximal
Tssr69470	transcription start site region 69470	932 bp downstream